Introduction:

Protein ubiquitination is a pivotal post-translational modification influencing various biological processes, including protein degradation, cell proliferation, apoptosis, endocytosis, and immune responses. This modification involves the covalent attachment of ubiquitin molecules to lysine residues on target proteins, leading to a mass shift of 114.1 Da, which can be precisely detected by mass spectrometry. ​

At Complete Omics, we employ advanced 4D proteomics technology to offer comprehensive protein ubiquitination analysis services. Utilizing the state-of-the-art timsTOF HT or Orbitrap Astral mass spectrometer, we perform differential proteomics analysis through the DDA or DIA scanning mode, which enable the precise identification and quantification of ubiquitination-modified peptides and sites, providing deeper insights into the ubiquitination landscape of your samples.

Data analysis, including data validation, visualization and quantification, are performed with commercial softwares and Complete Omics’ unique R packages and scripts. Report will be sent to you in Excel format as well as a summary in PDF format. We will also provide you any details you need for your papers’ MATERIALS AND METHODS section. We will make sure you understand your result and help you with your paper writing with free follow-up services.

Service workflow:

  1. Sample Preparation: Extraction and digestion of proteins from your samples to generate peptides suitable for mass spectrometry analysis.
  2. Enrichment: Selective enrichment of ubiquitinated peptides to enhance detection sensitivity.
  3. Mass Spectrometry Analysis: Application of  label-free ubiquitinated proteomics technology using the timsTOF HT or Orbitrap Astral mass spectrometer for high-resolution detection and quantification.
  4. Data Analysis: Comprehensive bioinformatics analysis to identify ubiquitination sites and quantify modification levels across different conditions.

Applications:

  • Disease Mechanism Studies: Understanding the role of ubiquitination in disease progression, such as neurological degenerative diseases, cancers etc.
  • Drug Development: Identifying potential therapeutic targets involving ubiquitination pathways.
  • Biomarker Discovery: Detecting ubiquitination-based biomarkers for diagnostic purposes.

 

Sample types we accept:

1, 2D gel spots, SDS-PAGE bands

2, Cell Lysates and Tissue Lysates

3, Biofluids, such as plasma*, serum*, saliva, tear, etc.

*We provide High Abundance Protein Depletion Service to significantly (100-500 folds) increase the depth of your biofluid proteomics analysis by removing top abundant proteins from your samples. Read more for details​.

4, FFPE slide/ FFPE extract 5, Customized sample types (please contact us to discuss)

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